Basic Information
Locus ID:
gene:TRIDC5AG022870
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 300500036 | 300509472 | - | gene:TRIDC5AG022870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 193,821.59 Da | 48.45 | 72.35 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 451 | 492 | 2.6263E-15 | - |
| Pfam | PF02791 | DDT domain | 235 | 290 | 1.3E-12 | IPR018501 |
| Pfam | PF15612 | WSTF, HB1, Itc1p, MBD9 motif 1 | 350 | 381 | 1.1E-4 | IPR028942 |
| Pfam | PF00628 | PHD-finger | 451 | 493 | 1.6E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1427 | 1480 | 1.68E-10 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 445 | 497 | 3.54E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1417 | 1490 | 9.7E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 443 | 509 | 3.5E-14 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1216 | 1265 | 13.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1723 | 1770 | 1.6 | IPR001965 |
| SMART | SM00571 | testlast3 | 234 | 294 | 2.2E-12 | IPR018501 |
| SMART | SM00249 | PHD_3 | 450 | 493 | 2.2E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1428 | 1476 | 1.3 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 448 | 495 | 9.552299 | IPR019787 |
| ProSiteProfiles | PS50827 | DDT domain profile. | 234 | 294 | 15.345113 | IPR018501 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 451 | 492 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 989 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 207 | - | - |
| Coils | Coil | Coil | 373 | 393 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35210.2 | metalloendopeptidases;zinc ion binding;DNA binding. | 0 |
| RefSeq | XP_037433609.1 | DDT domain-containing protein PTM-like [Triticum dicoccoides] | 0 |
| F4JYC8 | DDT domain-containing protein PTM OS=Arabidopsis thaliana OX=3702 GN=PTM PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KFM2 | DDT domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG022870.