Basic Information
Locus ID:
gene:TRIDC5AG020840
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Domain of unknown function (DUF3337)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 266446532 | 266455026 | + | gene:TRIDC5AG020840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 93,859.03 Da | 41.31 | 80.48 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 140 | 471 | 4.44735E-52 | - |
| CDD | cd17041 | Ubl_WDR48 | 734 | 854 | 1.05395E-36 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 187 | 218 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 396 | 431 | 0.077 | IPR001680 |
| Pfam | PF11816 | Domain of unknown function (DUF3337) | 709 | 854 | 5.0E-25 | IPR021772 |
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 262 | 0.064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 175 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 356 | 391 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 318 | 349 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 141 | 553 | 7.94E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 308 | 1.5E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 309 | 583 | 6.6E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 181 | 218 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 352 | 391 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 433 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 262 | 6.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 436 | 472 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 127 | 176 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 310 | 349 | 1.1E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 359 | 392 | 11.550137 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 317 | 349 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 359 | 400 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 317 | 358 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 229 | 264 | 9.071468 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 378 | 392 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 205 | 219 | 8.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 378 | 392 | 8.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 336 | 350 | 8.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05090.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a DCAF protein. Mutants are defective in lateral root development and suggest roles for DDB1Cul4mediated protein degradation in regulating auxin accumulation during lateral root primordium development and lateral root meristem emergence. | 0 |
| RefSeq | XP_037435287.1 | WD repeat-containing protein 48-like [Triticum dicoccoides] | 0 |
| Q8TAF3 | WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453K817 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG020840.