Basic Information
Locus ID:
gene:TRIDC5AG019310
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase UPL5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 239828353 | 239834762 | - | gene:TRIDC5AG019310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 91,748.38 Da | 49.80 | 93.95 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 488 | 845 | 5.48008E-108 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 538 | 839 | 4.8E-68 | IPR000569 |
| Pfam | PF00240 | Ubiquitin family | 62 | 122 | 8.3E-6 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 62 | 130 | 1.83E-9 | IPR029071 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 486 | 833 | 7.06E-93 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 491 | 710 | 1.7E-52 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 609 | 689 | 1.7E-52 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 730 | 846 | 9.0E-32 | - |
| SMART | SM00119 | hect_3 | 507 | 845 | 1.1E-78 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 509 | 847 | 66.441826 | IPR000569 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 90 | 124 | 10.288086 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| Coils | Coil | Coil | 25 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12570.1 | ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves. | 0 |
| RefSeq | XP_044381840.1 | E3 ubiquitin-protein ligase UPL5-like [Triticum aestivum] | 0 |
| Q9SU29 | E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KKA7 | E3 ubiquitin-protein ligase UPL5 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG019310.