Basic Information
Locus ID:
gene:TRIDC5AG017550
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 208426115 | 208430515 | - | gene:TRIDC5AG017550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 88,300.15 Da | 39.17 | 107.29 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 25 | 72 | 1.05012E-16 | - |
| Pfam | PF04564 | U-box domain | 23 | 97 | 4.3E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 11 | 102 | 3.0E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 399 | 789 | 2.39E-17 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 104 | 481 | 3.64E-31 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 565 | 796 | 4.2E-19 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 307 | 478 | 7.2E-22 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 98 | 1.6E-23 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 99 | 306 | 2.9E-21 | IPR011989 |
| SMART | SM00185 | arm_5 | 664 | 705 | 8.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 710 | 751 | 81.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 339 | 384 | 53.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 173 | 213 | 22.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 299 | 338 | 190.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 24 | 92 | 3.7E-26 | IPR003613 |
| SMART | SM00185 | arm_5 | 131 | 171 | 180.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 258 | 298 | 55.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 582 | 623 | 43.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 20 | 99 | 29.4491 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_037433528.1 | U-box domain-containing protein 44-like [Triticum dicoccoides] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KEW5 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG017550.