Basic Information
Locus ID:
gene:TRIDC5AG015040
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 138792208 | 138796761 | + | gene:TRIDC5AG015040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 33,184.19 Da | 49.95 | 53.92 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 219 | 276 | 2.0E-25 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 41 | 117 | 5.4E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 171 | 214 | 3.1E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 171 | 218 | 1.11E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 108 | 165 | 1.44E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 37 | 106 | 5.1E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 237 | 7.2E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 242 | 283 | 1.8E-18 | - |
| SMART | SM00184 | ring_2 | 172 | 214 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 34 | 105 | 24.833126 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 172 | 215 | 11.81064 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 107 | 171 | 33.718544 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_037433299.1 | E3 ubiquitin-protein ligase MIEL1-like [Triticum dicoccoides] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KD01 | RING finger and CHY zinc finger domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG015040.