Basic Information
Locus ID:
gene:TRIDC5AG012420
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 102914698 | 102919301 | + | gene:TRIDC5AG012420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 75,222.01 Da | 51.63 | 94.24 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 269 | 311 | 7.63063E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 390 | 429 | 8.4E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 474 | 511 | 4.1E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 265 | 335 | 9.6E-23 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 340 | 1.88E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 360 | 664 | 2.41E-50 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 265 | 339 | 2.5E-32 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 22 | 132 | 4.6E-7 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 483 | 650 | 1.7E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 360 | 482 | 2.7E-26 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 268 | 331 | 3.0E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 431 | 471 | 0.57 | IPR000225 |
| SMART | SM00185 | arm_5 | 390 | 430 | 1.6E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 472 | 512 | 2.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 554 | 594 | 29.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 401 | 443 | 13.002399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 264 | 338 | 45.229832 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 137 | 157 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_037432848.1 | protein spotted leaf 11-like [Triticum dicoccoides] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6KDN2 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG012420.