Basic Information
Locus ID:
gene:TRIDC5AG011270
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
protein Sb04g004280 source
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 85444510 | 85447879 | - | gene:TRIDC5AG011270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 17,712.44 Da | 28.29 | 99.36 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 25 | 100 | 1.81992E-53 | - |
| Pfam | PF00240 | Ubiquitin family | 103 | 149 | 1.2E-19 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 27 | 98 | 8.0E-34 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 100 | 149 | 1.53E-19 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 24 | 100 | 1.08E-34 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 101 | 149 | 6.0E-32 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 22 | 100 | 1.2E-47 | - |
| SMART | SM00213 | ubq_7 | 101 | 172 | 1.7E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 25 | 96 | 3.0E-35 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 25 | 100 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 101 | 176 | 21.720171 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 51 | 76 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 77 | 98 | 6.6E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 56 | 76 | 6.6E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 35 | 55 | 6.6E-39 | IPR019956 |
| Coils | Coil | Coil | 148 | 149 | - | - |
| Coils | Coil | Coil | 171 | 174 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_048550185.1 | polyubiquitin-like [Triticum urartu] | 0 |
| P0CG83 | Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453JW67 | Polyubiquitin OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG011270.