Basic Information
Locus ID:
gene:TRIDC5AG009920
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 68205247 | 68206810 | + | gene:TRIDC5AG009920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 50,646.39 Da | 42.43 | 78.77 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 105 | 436 | 2.46457E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 285 | 9.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 392 | 435 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 381 | 0.089 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 215 | 243 | 0.0017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 102 | 440 | 2.56E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 89 | 182 | 5.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 201 | 296 | 5.1E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 297 | 462 | 2.3E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 296 | 335 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 382 | 0.042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 286 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 244 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 170 | 0.63 | IPR001680 |
| SMART | SM00320 | WD40_4 | 94 | 131 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 436 | 4.2E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 295 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 395 | 445 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 212 | 249 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 253 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 285 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 352 | 381 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 352 | 381 | 8.834696 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 423 | 437 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 231 | 245 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 369 | 383 | 1.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 62 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49450.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037432520.1 | protein JINGUBANG-like [Triticum dicoccoides] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KD08 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG009920.