Basic Information
Locus ID:
gene:TRIDC5AG008240
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 51298838 | 51301406 | + | gene:TRIDC5AG008240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 17,733.03 Da | 29.77 | 81.91 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 54 | 145 | 1.0E-14 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 22 | 157 | 3.99E-37 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 12 | 157 | 5.9E-42 | IPR016135 |
| SMART | SM00212 | ubc_7 | 27 | 157 | 5.5E-5 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 24 | 157 | 33.579449 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52560.1 | ubiquitin E2 variant 1D-4. MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ4/UEV1D transcripts are found in most plant organs, like the other three MMZ/UEV1 family members, but it is normally present at higher levels. In addition, MMZ4/UEV1D is the only family member whose transcripts are detected in pollen. However, MMZ4/UEV1D transcript levels do not appear to be stress-inducible. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays. | 0 |
| RefSeq | XP_037432389.1 | ubiquitin-conjugating enzyme E2 variant 1D-like [Triticum dicoccoides] | 0 |
| Q9SVD7 | Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1 | 0 | |
| TrEMBL | A0A453JQS4 | UBC core domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG008240.