Basic Information
Locus ID:
gene:TRIDC5AG003370
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 18277910 | 18288172 | - | gene:TRIDC5AG003370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 100,369.35 Da | 46.97 | 87.08 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12657 | Transcription factor IIIC subunit delta N-term | 19 | 163 | 5.5E-12 | IPR024761 |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 390 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 106 | 511 | 1.1E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 434 | 515 | 1.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 212 | 401 | 4.6E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 458 | 497 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 78 | 123 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 390 | 3.9E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 390 | 9.138305 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 186 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49400.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037432056.1 | uncharacterized protein LOC119298855 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6KBN9 | TFIIIC_delta domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG003370.