Basic Information
Locus ID:
gene:TRIDC4BG064210
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 672810813 | 672814628 | + | gene:TRIDC4BG064210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 138,184.80 Da | 38.87 | 89.26 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02667 | Peptidase_C19K | 838 | 1205 | 3.77038E-51 | - |
| Pfam | PF13968 | Domain of unknown function (DUF4220) | 63 | 481 | 7.4E-64 | IPR025315 |
| Pfam | PF04578 | Protein of unknown function, DUF594 | 717 | 770 | 4.0E-22 | IPR007658 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 838 | 1205 | 1.5E-36 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 835 | 1207 | 8.05E-66 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 831 | 1209 | 2.9E-67 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 837 | 1208 | 35.71151 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 838 | 853 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1051 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1052 | - | - |
| Coils | Coil | Coil | 1213 | 1217 | - | - |
| Coils | Coil | Coil | 1063 | 1083 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_037427578.1 | uncharacterized protein LOC119293119 [Triticum dicoccoides] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 0 | |
| TrEMBL | I1IKW8 | USP domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_4g15430v3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG064210.