halophFGD

Basic Information

Locus ID: gene:TRIDC4BG062540

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: Ring finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
4B	665329183	665333340	-	gene:TRIDC4BG062540

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.56	53,573.20 Da	46.07	82.33	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16450	mRING-C3HGC3_RFWD3	2	49	3.82707E-20	-
Pfam	PF13639	Ring finger domain	2	49	2.6E-9	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	2	63	2.91E-13	-
SUPERFAMILY	SSF50978	WD40 repeat-like	198	490	2.38E-10	IPR036322
Gene3D	G3DSA:2.130.10.10	-	150	366	9.2E-9	IPR015943
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1	129	8.4E-15	IPR013083
SMART	SM00184	ring_2	3	49	4.0E-4	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	3	49	12.238477	IPR001841
Coils	Coil	Coil	70	90	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K15691 (E3 ubiquitin-protein ligase RFWD3 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G03450.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_037427031.1	E3 ubiquitin-protein ligase RFWD3-like [Triticum dicoccoides]
Swiss-Prot	A0A1L8GLK3	E3 ubiquitin-protein ligase rfwd3.L OS=Xenopus laevis OX=8355 GN=rfwd3.L PE=1 SV=1
TrEMBL	A0A3B6IZT8	RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4BG062540.