halophFGD

Basic Information

Locus ID: gene:TRIDC4BG062010

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
4B	661762151	661873346	-	gene:TRIDC4BG062010

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.54	135,817.27 Da	33.26	88.32	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	9	317	4.70113E-77	-
Pfam	PF00400	WD domain, G-beta repeat	44	79	1.1E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	241	276	1.2E-5	IPR001680
Pfam	PF04053	Coatomer WD associated region	347	768	2.0E-128	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	126	163	1.6E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	84	121	4.1E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	198	231	7.9E-4	IPR001680
Pfam	PF06957	Coatomer (COPI) alpha subunit C-terminus	815	1218	2.7E-172	IPR010714
SUPERFAMILY	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	237	548	5.75E-14	IPR011048
SUPERFAMILY	SSF50978	WD40 repeat-like	4	315	1.28E-74	IPR036322
Gene3D	G3DSA:1.25.40.470	-	640	812	6.4E-60	-
Gene3D	G3DSA:2.130.10.10	-	1	319	1.1E-126	IPR015943
SMART	SM00320	WD40_4	124	163	4.5E-11	IPR001680
SMART	SM00320	WD40_4	82	121	2.8E-10	IPR001680
SMART	SM00320	WD40_4	279	317	72.0	IPR001680
SMART	SM00320	WD40_4	237	276	3.1E-6	IPR001680
SMART	SM00320	WD40_4	193	232	5.5E-6	IPR001680
SMART	SM00320	WD40_4	40	79	1.3E-6	IPR001680
SMART	SM00320	WD40_4	2	37	15.0	IPR001680
PIRSF	PIRSF003354	Alpha-COP	1	1214	0.0	IPR016391
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	244	285	14.919653	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	200	241	12.981398	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	200	234	10.574686	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	89	121	11.286501	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	47	88	13.449252	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	89	130	14.217871	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	47	82	10.469233	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	131	164	15.320672	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	244	276	11.81377	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	131	164	12.631039	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	150	164	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	108	122	4.2E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	263	277	4.2E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	150	164	4.2E-7	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	859	878	-	-

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat) GO:0030126 (COPI vesicle coat)

KEGG Pathway

KO Term:

K05236 (coatomer subunit alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62020.1	Coatomer, alpha subunit.
RefSeq	XP_037426957.1	coatomer subunit alpha-3-like [Triticum dicoccoides]
Swiss-Prot	Q0J3D9	Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1
TrEMBL	A0A3B6IXX8	Coatomer subunit alpha OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4BG062010.