Basic Information
Locus ID:
gene:TRIDC4BG060360
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 655122042 | 655123470 | + | gene:TRIDC4BG060360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 33,870.17 Da | 59.50 | 62.43 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 23 | 66 | 2.5E-10 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 90 | 134 | 7.5E-10 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 169 | 212 | 1.3E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 264 | 308 | 2.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 219 | 4.48E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 71 | 7.36E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 264 | 314 | 4.54E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 140 | 6.6E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 218 | 3.2E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 314 | 3.2E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 71 | 4.6E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 145 | 1.7E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 169 | 211 | 8.3E-8 | IPR001841 |
| SMART | SM00184 | ring_2 | 265 | 307 | 5.7E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 24 | 65 | 4.1E-4 | IPR001841 |
| SMART | SM00184 | ring_2 | 91 | 133 | 7.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 265 | 308 | 12.828597 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 91 | 134 | 12.031935 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 212 | 13.049892 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 66 | 11.943417 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41450.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037428362.1 | transcriptional repressor NF-X1-like [Triticum dicoccoides] | 0 |
| Q8GT74 | NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IXE3 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG060360.