Basic Information
Locus ID:
gene:TRIDC4BG057950
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 642379074 | 642381799 | - | gene:TRIDC4BG057950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 64,613.90 Da | 52.84 | 77.51 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 14 | 38 | 1.05149E-6 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 10 | 37 | 1.5E-4 | IPR018957 |
| Pfam | PF00092 | von Willebrand factor type A domain | 167 | 353 | 4.6E-23 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 523 | 575 | 5.4E-13 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 162 | 356 | 5.27E-34 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 45 | 2.27E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 53 | 3.7E-7 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 167 | 357 | 2.0E-46 | IPR036465 |
| SMART | SM00327 | VWA_4 | 165 | 352 | 3.0E-24 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 167 | 363 | 16.41654 | IPR002035 |
| Coils | Coil | Coil | 489 | 516 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037426743.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IVF5 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG057950.