Basic Information
Locus ID:
gene:TRIDC4BG057940
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 642271002 | 642275171 | - | gene:TRIDC4BG057940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 70,824.20 Da | 48.49 | 83.39 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01466 | vWA_C3HC4_type | 194 | 364 | 1.05506E-55 | - |
| Pfam | PF00092 | von Willebrand factor type A domain | 195 | 371 | 1.3E-24 | IPR002035 |
| Pfam | PF17123 | RING-like zinc finger | 22 | 51 | 4.2E-9 | IPR001841 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 540 | 612 | 1.1E-19 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 191 | 377 | 5.29E-33 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 72 | 2.94E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 175 | 1.9E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 195 | 379 | 1.9E-42 | IPR036465 |
| SMART | SM00327 | VWA_4 | 193 | 383 | 4.3E-25 | IPR002035 |
| SMART | SM00184 | ring_2 | 22 | 65 | 5.6E-6 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 195 | 378 | 16.80397 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 22 | 66 | 11.574592 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 649 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037426740.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453J5H8 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG057940.