Basic Information
Locus ID:
gene:TRIDC4BG057320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prp19/Pso4-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 639236072 | 639242767 | + | gene:TRIDC4BG057320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 60,941.42 Da | 31.76 | 82.45 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 254 | 544 | 1.19288E-54 | - |
| CDD | cd16656 | RING-Ubox_PRP19 | 33 | 85 | 3.88322E-26 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 426 | 455 | 0.27 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 514 | 544 | 0.0082 | IPR001680 |
| Pfam | PF08606 | Prp19/Pso4-like | 97 | 161 | 1.7E-30 | IPR013915 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 321 | 1.8E-6 | IPR001680 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 84 | 3.8E-13 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 253 | 552 | 5.31E-61 | IPR036322 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 90 | 1.3E-22 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 230 | 546 | 4.0E-84 | IPR015943 |
| SMART | SM00320 | WD40_4 | 370 | 411 | 0.024 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 31 | 97 | 1.2E-20 | IPR003613 |
| SMART | SM00320 | WD40_4 | 414 | 455 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 504 | 545 | 0.026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 322 | 2.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 367 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 497 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 280 | 1.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 379 | 420 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 290 | 322 | 12.341042 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 335 | 376 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 379 | 414 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 322 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 464 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 27 | 101 | 21.886028 | IPR003613 |
| Coils | Coil | Coil | 146 | 166 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33340.1 | MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_044983137.1 | pre-mRNA-processing factor 19-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q9AV81 | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453J566 | Pre-mRNA-processing factor 19 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG057320.