Basic Information
Locus ID:
gene:TRIDC4BG056120
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
protein Sb04g004280 source
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 630835591 | 630838429 | + | gene:TRIDC4BG056120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 35,414.64 Da | 45.68 | 95.14 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 170 | 237 | 2.2E-17 | IPR000626 |
| Pfam | PF14560 | Ubiquitin-like domain | 251 | 284 | 0.0087 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 89 | 159 | 8.8E-22 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 80 | 9.4E-17 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 84 | 159 | 1.2E-24 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 238 | 285 | 6.13E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 162 | 238 | 1.18E-21 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 10 | 85 | 1.02E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 240 | 284 | 2.1E-7 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 5.0E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 164 | 239 | 3.9E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 86 | 163 | 1.1E-29 | - |
| SMART | SM00213 | ubq_7 | 1 | 83 | 2.8E-16 | IPR000626 |
| SMART | SM00213 | ubq_7 | 87 | 158 | 5.9E-22 | IPR000626 |
| SMART | SM00213 | ubq_7 | 167 | 238 | 2.8E-17 | IPR000626 |
| SMART | SM00213 | ubq_7 | 240 | 306 | 0.86 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 87 | 19.107122 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 167 | 238 | 19.107122 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 240 | 294 | 9.177541 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 87 | 158 | 22.133904 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 113 | 138 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 97 | 117 | 4.9E-21 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 118 | 138 | 4.9E-21 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 139 | 160 | 4.9E-21 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_048550860.1 | polyubiquitin-like [Triticum urartu] | 0 |
| P69309 | Polyubiquitin OS=Avena fatua OX=4499 PE=2 SV=2 | 0 | |
| TrEMBL | M7YUF9 | Polyubiquitin OS=Triticum urartu OX=4572 GN=TRIUR3_06146 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG056120.