Basic Information
Locus ID:
gene:TRIDC4BG053460
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 612348854 | 612350111 | - | gene:TRIDC4BG053460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 30,719.83 Da | 57.18 | 84.21 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 118 | 161 | 8.47751E-19 | - |
| Pfam | PF13639 | Ring finger domain | 118 | 161 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 167 | 1.44E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 168 | 2.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 119 | 160 | 2.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 161 | 12.54829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 263 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43420.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037426499.1 | RING-H2 finger protein ATL1-like [Triticum dicoccoides] | 0 |
| Q9LSW9 | RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6IUH5 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG053460.