halophFGD

Basic Information

Locus ID: gene:TRIDC4BG052810

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
4B	606545735	606547117	-	gene:TRIDC4BG052810

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
11.20	43,339.87 Da	47.73	68.51	-0.61

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	260	294	0.024	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	181	389	3.66E-27	IPR036322
Gene3D	G3DSA:2.130.10.10	-	160	394	6.5E-29	IPR015943
SMART	SM00320	WD40_4	352	389	44.0	IPR001680
SMART	SM00320	WD40_4	258	295	0.0035	IPR001680
SMART	SM00320	WD40_4	172	210	170.0	IPR001680
SMART	SM00320	WD40_4	307	349	300.0	IPR001680
SMART	SM00320	WD40_4	217	255	0.34	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	242	264	9.639578	IPR001680
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	1	26	11.15951	IPR000571
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	242	256	-	IPR019775
MobiDBLite	mobidb-lite	consensus disorder prediction	81	113	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	51	113	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10260 (F-box and WD-40 domain protein 7)

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_044371402.1	zinc finger CCCH domain-containing protein 48-like [Triticum aestivum]	0
TrEMBL	A0A3B6IYA8	C3H1-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4BG052810.