Basic Information
Locus ID:
gene:TRIDC4BG051620
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 596260435 | 596269456 | + | gene:TRIDC4BG051620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 84,284.77 Da | 47.14 | 76.24 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 661 | 694 | 0.078 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 55 | 89 | 1.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 52 | 697 | 3.05E-50 | IPR036322 |
| SUPERFAMILY | SSF48452 | TPR-like | 400 | 478 | 5.48E-9 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 612 | 737 | 3.0E-12 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 388 | 517 | 9.4E-10 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 43 | 352 | 4.1E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 147 | 187 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 656 | 695 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 610 | 653 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 134 | 0.063 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 255 | 80.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 318 | 63.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 57 | 98 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 57 | 89 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 663 | 694 | 9.004632 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 601 | - | - |
| Coils | Coil | Coil | 480 | 507 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10940.2 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037426412.1 | WD and tetratricopeptide repeats protein 1-like [Triticum dicoccoides] | 0 |
| Q94BQ3 | Protein ALTERED SEED GERMINATION 2 OS=Arabidopsis thaliana OX=3702 GN=ASG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HQZ3 | WD and tetratricopeptide repeats protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG051620.