Basic Information
Locus ID:
gene:TRIDC4BG048540
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
BEST Arabidopsis thaliana protein match is Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 570453415 | 570464479 | - | gene:TRIDC4BG048540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 172,879.78 Da | 53.49 | 76.72 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02257 | Peptidase_C19 | 1317 | 1551 | 4.08917E-13 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 1228 | 1529 | 1.1E-21 | IPR001394 |
| Pfam | PF04781 | Protein of unknown function (DUF627) | 46 | 153 | 1.7E-18 | IPR006866 |
| Pfam | PF04780 | Protein of unknown function (DUF629) | 316 | 797 | 5.9E-111 | IPR006865 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1227 | 1551 | 2.94E-32 | IPR038765 |
| SUPERFAMILY | SSF48452 | TPR-like | 36 | 160 | 6.54E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 24 | 185 | 5.2E-6 | IPR011990 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1210 | 1552 | 8.3E-34 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1227 | 1553 | 20.290291 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1058 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 886 | 916 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1144 | 1174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1147 | 1174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 311 | - | - |
| Coils | Coil | Coil | 959 | 993 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47890.1 | Ubiquitin carboxyl-terminal hydrolase-related protein. | 0 |
| RefSeq | XP_037426189.1 | uncharacterized protein LOC119291519 isoform X1 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6IUU3 | USP domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG048540.