Basic Information
Locus ID:
gene:TRIDC4BG041680
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 500176680 | 500178702 | + | gene:TRIDC4BG041680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 44,334.43 Da | 45.79 | 105.17 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 22 | 64 | 5.22777E-25 | - |
| Pfam | PF04564 | U-box domain | 18 | 87 | 1.2E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 15 | 88 | 1.36E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 125 | 398 | 3.5E-19 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 226 | 410 | 6.1E-9 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 99 | 3.5E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 119 | 225 | 4.3E-8 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 21 | 84 | 1.5E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 17 | 91 | 35.384567 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49810.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037425731.1 | U-box domain-containing protein 75-like [Triticum dicoccoides] | 0 |
| Q10PI9 | U-box domain-containing protein 75 OS=Oryza sativa subsp. japonica OX=39947 GN=TUD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6ITB8 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG041680.