Basic Information
Locus ID:
gene:TRIDC4BG040100
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 482131663 | 482136033 | + | gene:TRIDC4BG040100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 47,414.28 Da | 38.70 | 80.40 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01452 | VWA_26S_proteasome_subunit | 51 | 238 | 1.73604E-113 | - |
| Pfam | PF02809 | Ubiquitin interaction motif | 370 | 384 | 0.027 | IPR003903 |
| Pfam | PF02809 | Ubiquitin interaction motif | 273 | 286 | 0.11 | IPR003903 |
| Pfam | PF02809 | Ubiquitin interaction motif | 339 | 351 | 0.27 | IPR003903 |
| Pfam | PF13519 | von Willebrand factor type A domain | 56 | 164 | 1.0E-26 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 54 | 229 | 8.7E-37 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 53 | 236 | 5.2E-81 | IPR036465 |
| Gene3D | G3DSA:1.10.287.3990 | - | 269 | 383 | 2.9E-18 | - |
| SMART | SM00327 | VWA_4 | 52 | 225 | 1.9E-8 | IPR002035 |
| SMART | SM00726 | uim | 369 | 388 | 1.9 | IPR003903 |
| SMART | SM00726 | uim | 271 | 290 | 0.087 | IPR003903 |
| SMART | SM00726 | uim | 336 | 355 | 7.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 271 | 290 | 10.427235 | IPR003903 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 55 | 239 | 11.256663 | IPR002035 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 369 | 386 | 8.630105 | IPR003903 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 451 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38630.1 | regulatory particle non-ATPase 10. Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities | 0 |
| RefSeq | XP_037425609.1 | 26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1 [Triticum dicoccoides] | 0 |
| O82143 | 26S proteasome non-ATPase regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RPN10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IVF6 | VWFA domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG040100.