Basic Information
Locus ID:
gene:TRIDC4BG039040
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 470439808 | 470449058 | + | gene:TRIDC4BG039040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 125,214.58 Da | 41.47 | 79.79 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 920 | 953 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 486 | 9.4E-4 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 894 | 1110 | 3.14E-15 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 495 | 958 | 2.04E-40 | IPR011047 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 345 | 566 | 3.3E-25 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 567 | 683 | 4.2E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 741 | 967 | 3.9E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 330 | 566 | 3.3E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 981 | 1119 | 1.5E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 440 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1005 | 1047 | 5.6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 1.6E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.7E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 826 | 868 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 871 | 911 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 664 | 340.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 496 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 921 | 962 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.886961 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 921 | 953 | 10.205597 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_037425538.1 | protein TPR3-like isoform X1 [Triticum dicoccoides] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IR67 | TOPLESS OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG039040.