Basic Information
Locus ID:
gene:TRIDC4BG038680
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ribosomal_L40e
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 466241205 | 466430294 | - | gene:TRIDC4BG038680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.99 | 16,090.65 Da | 33.76 | 85.75 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 1 | 82 | 3.58783E-52 | - |
| Pfam | PF01020 | Ribosomal L40e family | 85 | 129 | 1.8E-25 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 3 | 80 | 2.0E-31 | IPR000626 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 84 | 137 | 6.59E-15 | IPR011332 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 7.46E-32 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 82 | 4.5E-43 | - |
| Gene3D | G3DSA:4.10.1060.50 | - | 85 | 137 | 6.5E-25 | IPR038587 |
| SMART | SM01377 | Ribosomal_L40e_3 | 84 | 138 | 1.1E-23 | IPR001975 |
| SMART | SM00213 | ubq_7 | 1 | 78 | 1.4E-31 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 82 | 28.579422 | IPR000626 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_037425515.1 | ubiquitin-like [Triticum dicoccoides] | 0 |
| P0CH34 | Ubiquitin-ribosomal protein eL40z fusion protein OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453IGL1 | Ubiquitin-like domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG038680.