Basic Information
Locus ID:
gene:TRIDC4BG037600
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 455627709 | 455632058 | + | gene:TRIDC4BG037600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 57,658.07 Da | 67.30 | 62.66 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 134 | 186 | 3.41776E-24 | - |
| Pfam | PF12315 | Protein DA1 | 283 | 498 | 1.1E-99 | IPR022087 |
| Pfam | PF00412 | LIM domain | 134 | 188 | 2.4E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 128 | 159 | 6.31E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 160 | 215 | 9.21E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 129 | 193 | 6.0E-13 | - |
| SMART | SM00132 | lim_4 | 133 | 185 | 2.2E-10 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 132 | 192 | 11.4544 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 134 | 168 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 448 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_037425421.1 | protein DA1-related 2-like isoform X1 [Triticum dicoccoides] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D5XIC1 | DA2 OS=Triticum aestivum OX=4565 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG037600.