Basic Information
Locus ID:
gene:TRIDC4BG033960
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 414155963 | 414157828 | + | gene:TRIDC4BG033960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 33,946.61 Da | 61.33 | 74.43 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 215 | 257 | 7.21658E-21 | - |
| Pfam | PF13639 | Ring finger domain | 215 | 257 | 5.3E-13 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 9 | 42 | 7.3E-9 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 269 | 2.12E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 263 | 4.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 216 | 256 | 4.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 216 | 257 | 12.445019 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 298 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55530.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037425147.1 | E3 ubiquitin-protein ligase SIRP1-like [Triticum dicoccoides] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IR25 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG033960.