Basic Information
Locus ID:
gene:TRIDC4BG033800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 410955356 | 410962639 | - | gene:TRIDC4BG033800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 150,121.14 Da | 40.72 | 78.51 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15567 | PHD4_NSD | 795 | 834 | 8.7292E-13 | - |
| CDD | cd04301 | NAT_SF | 990 | 1050 | 4.45874E-4 | - |
| Pfam | PF05641 | Agenet domain | 15 | 91 | 2.0E-12 | IPR008395 |
| Pfam | PF16135 | Tify domain binding domain | 717 | 768 | 4.2E-20 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 794 | 836 | 6.4E-9 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 969 | 1055 | 7.48E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 775 | 835 | 9.08E-14 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 962 | 1074 | 2.8E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 785 | 836 | 4.6E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 837 | 895 | 2.3E-7 | IPR013083 |
| SMART | SM00249 | PHD_3 | 836 | 893 | 4.2 | IPR001965 |
| SMART | SM00743 | agenet_At_2 | 10 | 75 | 0.15 | IPR014002 |
| SMART | SM00743 | agenet_At_2 | 98 | 155 | 0.0033 | IPR014002 |
| SMART | SM00249 | PHD_3 | 794 | 835 | 2.2E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 792 | 837 | 10.602499 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 934 | 1110 | 10.432636 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 795 | 834 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58610.2 | - | 0 |
| RefSeq | XP_037425133.1 | uncharacterized protein LOC119290622 isoform X1 [Triticum dicoccoides] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IRT2 | Agenet domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG033800.