Basic Information
Locus ID:
gene:TRIDC4BG033570
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Tetratricopeptide repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 407685041 | 407689028 | - | gene:TRIDC4BG033570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 107,773.55 Da | 53.87 | 83.66 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 785 | 813 | 0.18 | IPR019734 |
| SUPERFAMILY | SSF54695 | POZ domain | 250 | 351 | 3.14E-8 | IPR011333 |
| SUPERFAMILY | SSF48452 | TPR-like | 457 | 813 | 5.42E-16 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 782 | 914 | 8.28E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 661 | 849 | 1.8E-13 | IPR011990 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 248 | 392 | 2.2E-12 | IPR011333 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 438 | 625 | 1.0E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 861 | 965 | 4.5E-9 | IPR011990 |
| SMART | SM00028 | tpr_5 | 880 | 913 | 38.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 710 | 743 | 52.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 784 | 817 | 0.19 | IPR019734 |
| SMART | SM00225 | BTB_4 | 254 | 354 | 0.0059 | IPR000210 |
| SMART | SM00028 | tpr_5 | 584 | 617 | 3.3 | IPR019734 |
| SMART | SM00028 | tpr_5 | 914 | 946 | 460.0 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 784 | 817 | 8.1129 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51770.2 | tetratricopeptide repeat (TPR)-containing protein. Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS | 0 |
| RefSeq | XP_037430711.1 | ethylene-overproduction protein 1-like [Triticum dicoccoides] | 0 |
| O65020 | Ethylene-overproduction protein 1 OS=Arabidopsis thaliana OX=3702 GN=ETO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6ITI5 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG033570.