Basic Information
Locus ID:
gene:TRIDC4BG032640
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 399798535 | 399807485 | - | gene:TRIDC4BG032640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 103,480.41 Da | 71.67 | 59.53 | -1.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16574 | RING-HC_Topors | 569 | 611 | 4.69205E-18 | - |
| Pfam | PF00628 | PHD-finger | 662 | 706 | 4.4E-8 | IPR019787 |
| Pfam | PF13639 | Ring finger domain | 569 | 611 | 5.6E-7 | IPR001841 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 633 | 706 | 1.22E-14 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 568 | 618 | 2.91E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 550 | 641 | 1.3E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 650 | 732 | 2.6E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 661 | 706 | 4.5E-8 | IPR001965 |
| SMART | SM00184 | ring_2 | 569 | 610 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 569 | 611 | 12.25323 | IPR001841 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 659 | 708 | 9.6057 | IPR019787 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 588 | 597 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 310 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05670.1 | RING/U-box protein. | 0 |
| RefSeq | XP_037427336.1 | uncharacterized protein LOC119292706 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6ITA8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG032640.