Basic Information
Locus ID:
gene:TRIDC4BG028770
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
ATP-dependent protease La (LON) substrate-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 334032346 | 334250857 | + | gene:TRIDC4BG028770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 64,727.44 Da | 52.88 | 83.69 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16514 | RING2-HC_LONFs | 246 | 287 | 6.69503E-22 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 248 | 286 | 2.0E-11 | - |
| Pfam | PF02190 | ATP-dependent protease La (LON) substrate-binding domain | 333 | 514 | 2.2E-20 | IPR003111 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 311 | 1.27E-18 | - |
| SUPERFAMILY | SSF88697 | PUA domain-like | 333 | 516 | 2.73E-38 | IPR015947 |
| SUPERFAMILY | SSF48452 | TPR-like | 95 | 224 | 2.07E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 88 | 237 | 1.6E-14 | IPR011990 |
| Gene3D | G3DSA:2.30.130.40 | - | 331 | 433 | 3.0E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 238 | 330 | 2.6E-23 | IPR013083 |
| SMART | SM00464 | lon_5 | 332 | 555 | 2.9E-15 | IPR003111 |
| SMART | SM00184 | ring_2 | 249 | 286 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 249 | 287 | 13.079398 | IPR001841 |
| ProSiteProfiles | PS51787 | Lon N-terminal domain profile. | 330 | 528 | 16.671204 | IPR003111 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 264 | 273 | - | IPR017907 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18660.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_044369456.1 | LON peptidase N-terminal domain and RING finger protein 1-like isoform X1 [Triticum aestivum] | 0 |
| D3YY23 | LON peptidase N-terminal domain and RING finger protein 1 OS=Mus musculus OX=10090 GN=Lonrf1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8R7U5I2 | LON peptidase N-terminal domain and RING finger protein 1 OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG028770.