Basic Information
Locus ID:
gene:TRIDC4BG028570
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 331576523 | 331626787 | + | gene:TRIDC4BG028570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 135,365.30 Da | 42.97 | 76.78 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 103 | 226 | 1.01186E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 244 | 572 | 3.06036E-166 | - |
| Pfam | PF00917 | MATH domain | 109 | 228 | 2.9E-20 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 933 | 1142 | 7.2E-55 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 671 | 923 | 1.5E-75 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 246 | 567 | 3.3E-46 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 99 | 234 | 2.13E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 241 | 597 | 1.63E-96 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 849 | 946 | 4.8E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 99 | 242 | 6.2E-52 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 243 | 571 | 2.3E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 731 | 848 | 1.0E-42 | - |
| SMART | SM00061 | math_3 | 103 | 207 | 3.7E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 246 | 570 | 40.146183 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 101 | 226 | 38.443008 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 247 | 262 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 486 | 503 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| Coils | Coil | Coil | 586 | 606 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_037430387.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Triticum dicoccoides] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8R7U7E2 | ubiquitinyl hydrolase 1 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG028570.