Basic Information
Locus ID:
gene:TRIDC4BG027160
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 294162127 | 294166282 | - | gene:TRIDC4BG027160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 63,891.01 Da | 52.00 | 67.85 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 273 | 571 | 6.60733E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 310 | 1.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 494 | 529 | 0.0086 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 401 | 438 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 353 | 1.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 268 | 571 | 7.0E-72 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 571 | 1.3E-96 | IPR015943 |
| SMART | SM00320 | WD40_4 | 400 | 439 | 4.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 310 | 4.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 353 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 532 | 571 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 482 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 397 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 488 | 529 | 0.024 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 319 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 407 | 439 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 407 | 439 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 311 | 10.943775 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 321 | 358 | 12.024679 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 321 | 362 | 15.989036 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 297 | 311 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 297 | 311 | 4.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 340 | 354 | 4.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 426 | 440 | 4.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 172 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10580.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037430322.1 | pre-mRNA-processing factor 17-like [Triticum dicoccoides] | 0 |
| Q9DC48 | Pre-mRNA-processing factor 17 OS=Mus musculus OX=10090 GN=Cdc40 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6ISV3 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG027160.