Basic Information
Locus ID:
gene:TRIDC4BG026060
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 257146005 | 257149743 | - | gene:TRIDC4BG026060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 55,650.09 Da | 43.06 | 78.92 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 218 | 496 | 2.11501E-82 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 290 | 327 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 338 | 369 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 286 | 5.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 377 | 411 | 4.5E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 219 | 244 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 462 | 496 | 4.9E-6 | IPR001680 |
| Pfam | PF08799 | pre-mRNA processing factor 4 (PRP4) like | 86 | 114 | 1.3E-12 | IPR014906 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 208 | 495 | 5.49E-82 | IPR036322 |
| SUPERFAMILY | SSF158230 | PRP4-like | 65 | 118 | 3.92E-15 | IPR036285 |
| Gene3D | G3DSA:2.130.10.10 | - | 335 | 412 | 4.7E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 413 | 507 | 3.3E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 190 | 334 | 5.3E-35 | IPR015943 |
| Gene3D | G3DSA:4.10.280.110 | - | 55 | 136 | 3.0E-15 | IPR036285 |
| SMART | SM00320 | WD40_4 | 330 | 369 | 5.7E-8 | IPR001680 |
| SMART | SM00500 | pr04_2 | 81 | 134 | 3.2E-15 | IPR014906 |
| SMART | SM00320 | WD40_4 | 247 | 286 | 1.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 454 | 6.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 496 | 1.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 244 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 327 | 6.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 411 | 4.5E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 253 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 379 | 420 | 16.323217 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 295 | 336 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 337 | 378 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 295 | 331 | 11.286501 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 379 | 414 | 12.393768 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 337 | 374 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 496 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 286 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 286 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 464 | 496 | 11.81377 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 314 | 328 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 356 | 370 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 398 | 412 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 273 | 287 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 314 | 328 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 398 | 412 | 1.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| Coils | Coil | Coil | 58 | 78 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41500.1 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related. Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells. | 0 |
| RefSeq | XP_037430259.1 | U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Triticum dicoccoides] | 0 |
| O22212 | U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana OX=3702 GN=LIS PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6IP52 | SFM domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG026060.