Basic Information
Locus ID:
gene:TRIDC4BG026030
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 255816192 | 255831404 | - | gene:TRIDC4BG026030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 42,065.74 Da | 59.24 | 58.66 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 32 | 73 | 6.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 81 | 5.08E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 83 | 2.0E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 33 | 73 | 9.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 33 | 73 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 389 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22000.1 | RING-H2 group F2A. encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. | 0 |
| RefSeq | XP_037430253.1 | E3 ubiquitin-protein ligase RHF2A-like [Triticum dicoccoides] | 0 |
| Q9ZT42 | E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6U060 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG026030.