Basic Information
Locus ID:
gene:TRIDC4BG025190
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
TRIP-1
Description:
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 237982125 | 237987906 | + | gene:TRIDC4BG025190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 40,300.94 Da | 33.34 | 76.57 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 48 | 355 | 8.14615E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 48 | 78 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 355 | 9.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 260 | 0.038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 7.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 190 | 215 | 0.058 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 44 | 355 | 9.61E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 367 | 6.9E-106 | IPR015943 |
| SMART | SM00320 | WD40_4 | 218 | 260 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 39 | 79 | 0.65 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 303 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 215 | 8.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 318 | 357 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 2.9E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 325 | 355 | 9.203785 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 126 | 11.128319 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 78 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 183 | 220 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 325 | 355 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 228 | 263 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 228 | 269 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 183 | 224 | 12.780889 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 202 | 216 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 108 | 122 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 247 | 261 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 2.1E-7 | IPR020472 |
| Hamap | MF_03008 | Eukaryotic translation initiation factor 3 subunit I [EIF3I]. | 42 | 367 | 74.406143 | IPR027525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46290.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037430216.1 | eukaryotic translation initiation factor 3 subunit I-like [Triticum dicoccoides] | 0 |
| Q38884 | Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=3702 GN=TIF3I1 PE=2 SV=2 | 0 | |
| TrEMBL | F2CRB4 | Eukaryotic translation initiation factor 3 subunit I OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG025190.