Basic Information
Locus ID:
gene:TRIDC4BG021080
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
MIZ/SP-RING zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 174055855 | 174065035 | - | gene:TRIDC4BG021080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 67,774.87 Da | 41.02 | 74.74 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02891 | MIZ/SP-RING zinc finger | 211 | 259 | 2.7E-19 | IPR004181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 300 | 2.1E-35 | IPR013083 |
| ProSiteProfiles | PS51044 | Zinc finger SP-RING-type profile. | 200 | 277 | 38.696136 | IPR004181 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 561 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60410.3 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain. Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling | 0 |
| RefSeq | XP_037429990.1 | E3 SUMO-protein ligase SIZ2-like isoform X1 [Triticum dicoccoides] | 0 |
| Q6ASW7 | E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica OX=39947 GN=SIZ2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6IPJ9 | E3 SUMO-protein ligase SIZ1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG021080.