Basic Information
Locus ID:
gene:TRIDC4BG011670
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 68849255 | 68854256 | + | gene:TRIDC4BG011670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 39,262.23 Da | 36.49 | 81.98 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 170 | 0.0059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 299 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 52 | 340 | 3.11E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 275 | 351 | 3.5E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 37 | 274 | 4.8E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 214 | 255 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 43 | 83 | 0.0046 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 300 | 0.02 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 279 | 309 | 11.577833 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 50 | 92 | 9.672996 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 172 | 9.678328 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 4.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 70 | 84 | 4.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 4.8E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66240.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037429301.1 | protein ANTHESIS POMOTING FACTOR 1-like [Triticum dicoccoides] | 0 |
| Q9LYK6 | Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453HDZ0 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG011670.