Basic Information
Locus ID:
gene:TRIDC4BG011120
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 65071992 | 65073445 | - | gene:TRIDC4BG011120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 50,118.46 Da | 30.55 | 74.67 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 96 | 424 | 1.65344E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 380 | 423 | 0.0034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 370 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 278 | 0.0043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 160 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 90 | 433 | 2.01E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 82 | 189 | 1.4E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 190 | 290 | 5.5E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 291 | 473 | 1.5E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 0.0023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 424 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 279 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 123 | 161 | 0.52 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 371 | 5.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 85 | 122 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 329 | 0.0079 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 383 | 433 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 278 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 297 | 328 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 246 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 278 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 341 | 380 | 10.040596 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 411 | 425 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 266 | 280 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 224 | 238 | 1.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 63 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49450.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037429271.1 | protein JINGUBANG-like [Triticum dicoccoides] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IMA1 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG011120.