Basic Information
Locus ID:
gene:TRIDC4BG011020
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 63735010 | 63741422 | - | gene:TRIDC4BG011020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 53,202.46 Da | 41.82 | 78.78 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 163 | 225 | 6.7E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 232 | 2.7E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 289 | 6.67E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 174 | 2.96E-14 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 221 | 443 | 7.2E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 175 | 4.3E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 233 | 298 | 0.044 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 162 | 225 | 3.4E-16 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 88 | 302 | 37.876884 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 142 | 9.582937 | IPR001841 |
| Coils | Coil | Coil | 382 | 402 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16090.3 | - | 0 |
| RefSeq | XP_037429265.1 | probable E3 ubiquitin-protein ligase ARI1 [Triticum dicoccoides] | 0 |
| Q949V6 | Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana OX=3702 GN=ARI1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6IKU6 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG011020.