Basic Information
Locus ID:
gene:TRIDC4BG010160
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 56198084 | 56200688 | + | gene:TRIDC4BG010160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 33,124.98 Da | 60.95 | 55.56 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 173 | 217 | 2.2E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 222 | 277 | 2.0E-11 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 46 | 120 | 4.4E-20 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 43 | 110 | 3.01E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 224 | 1.98E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 111 | 168 | 1.57E-19 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 244 | 283 | 1.7E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 238 | 3.7E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 175 | 217 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 175 | 218 | 11.618851 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 39 | 108 | 25.866381 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 110 | 174 | 32.98003 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_037429199.1 | E3 ubiquitin-protein ligase SRFP1 [Triticum dicoccoides] | 0 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IKL6 | RING finger and CHY zinc finger domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG010160.