Basic Information
Locus ID:
gene:TRIDC4BG009520
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 51135421 | 51138771 | + | gene:TRIDC4BG009520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 26,931.09 Da | 64.56 | 91.71 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 175 | 210 | 1.9E-5 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 213 | 2.05E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 222 | 3.2E-11 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 177 | 241 | 0.0075 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 173 | 198 | 10.147783 | IPR003613 |
| Coils | Coil | Coil | 81 | 101 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01830.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_044974067.1 | U-box domain-containing protein 16-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q9LZW3 | U-box domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=PUB16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XQ44 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG009520.