halophFGD

Basic Information

Locus ID: gene:TRIDC4BG007220

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
4B	31766455	31771507	-	gene:TRIDC4BG007220

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.62	137,400.16 Da	34.51	88.69	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	18	326	2.13202E-77	-
Pfam	PF00400	WD domain, G-beta repeat	207	240	8.0E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	135	172	1.6E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	53	88	1.6E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	93	130	4.8E-9	IPR001680
Pfam	PF06957	Coatomer (COPI) alpha subunit C-terminus	824	1226	4.5E-167	IPR010714
Pfam	PF04053	Coatomer WD associated region	357	777	7.6E-129	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	250	285	1.9E-5	IPR001680
SUPERFAMILY	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	246	557	2.62E-14	IPR011048
SUPERFAMILY	SSF50978	WD40 repeat-like	9	324	4.58E-75	IPR036322
Gene3D	G3DSA:2.130.10.10	-	8	328	1.9E-127	IPR015943
Gene3D	G3DSA:1.25.40.470	-	649	821	7.1E-60	-
SMART	SM00320	WD40_4	49	88	2.1E-6	IPR001680
SMART	SM00320	WD40_4	91	130	5.5E-10	IPR001680
SMART	SM00320	WD40_4	288	326	150.0	IPR001680
SMART	SM00320	WD40_4	202	241	5.5E-6	IPR001680
SMART	SM00320	WD40_4	133	172	4.5E-11	IPR001680
SMART	SM00320	WD40_4	246	285	1.6E-6	IPR001680
SMART	SM00320	WD40_4	7	46	0.67	IPR001680
PIRSF	PIRSF003354	Alpha-COP	8	1222	0.0	IPR016391
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	253	285	11.971952	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	56	91	10.416506	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	98	139	14.017362	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	209	250	12.981398	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	209	243	10.574686	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	98	130	11.128319	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	56	97	13.382416	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	140	173	15.320672	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	140	173	12.631039	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	253	294	15.120162	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	159	173	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	117	131	3.3E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	272	286	3.3E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	159	173	3.3E-7	IPR020472

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat) GO:0030126 (COPI vesicle coat)

KEGG Pathway

KO Term:

K05236 (coatomer subunit alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62020.1	Coatomer, alpha subunit.
RefSeq	XP_037428982.1	coatomer subunit alpha-3-like [Triticum dicoccoides]
Swiss-Prot	Q0J3D9	Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1
TrEMBL	A0A3B6IMT6	Coatomer subunit alpha OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4BG007220.