Basic Information
Locus ID:
gene:TRIDC4BG006730
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger C3HC4 type domain containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 29145421 | 29154805 | - | gene:TRIDC4BG006730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 51,120.34 Da | 46.82 | 101.18 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 399 | 442 | 3.8E-11 | - |
| Pfam | PF10269 | Transmembrane Fragile-X-F protein | 10 | 274 | 1.9E-93 | IPR019396 |
| SUPERFAMILY | SSF57850 | RING/U-box | 393 | 444 | 8.99E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 377 | 448 | 3.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 402 | 436 | 0.0027 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 402 | 437 | 10.954966 | IPR001841 |
| Coils | Coil | Coil | 378 | 398 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18470.1 | Transmembrane Fragile-X-F-associated protein. | 0 |
| RefSeq | XP_037428945.1 | uncharacterized protein LOC119294783 [Triticum dicoccoides] | 0 |
| Q7M3S9 | RING finger protein B OS=Dictyostelium discoideum OX=44689 GN=rngB PE=2 SV=2 | 0 | |
| TrEMBL | M1FY33 | Zinc finger C3HC4 type domain containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG006730.