Basic Information
Locus ID:
gene:TRIDC4BG003440
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
stomatal movement
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 13178164 | 13183963 | - | gene:TRIDC4BG003440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 41,719.35 Da | 28.47 | 76.45 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 58 | 369 | 4.54547E-81 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 186 | 4.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 202 | 234 | 5.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 338 | 369 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 277 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 58 | 94 | 7.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 326 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 52 | 369 | 1.62E-73 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 369 | 1.5E-103 | IPR015943 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 4.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 326 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 378 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 277 | 5.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 97 | 136 | 0.0068 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 186 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 234 | 4.9E-6 | IPR001680 |
| PIRSF | PIRSF002394 | GNBP_B | 1 | 371 | 2.1E-139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 243 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 201 | 236 | 9.968326 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 103 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 245 | 281 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 286 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 153 | 195 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 153 | 191 | 10.15287 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 94 | 12.024679 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 173 | 187 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 221 | 235 | 7.7E-8 | IPR020472 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 62 | 78 | 2.6E-27 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 100 | 115 | 2.6E-27 | IPR001632 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 173 | 187 | 7.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 81 | 95 | 7.7E-8 | IPR020472 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 81 | 95 | 2.6E-27 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 118 | 135 | 2.6E-27 | IPR001632 |
| Coils | Coil | Coil | 4 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04011 (MAPK signaling pathway - yeast)
map04011 (MAPK signaling pathway - yeast)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04062 (Chemokine signaling pathway)
map04062 (Chemokine signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34460.1 | GTP binding protein beta 1. Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_037428709.1 | guanine nucleotide-binding protein subunit beta-like [Triticum dicoccoides] | 0 |
| Q40687 | Guanine nucleotide-binding protein subunit beta OS=Oryza sativa subsp. japonica OX=39947 GN=RGB1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453H1X1 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG003440.