Basic Information
Locus ID:
gene:TRIDC4BG000110
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4B | 461301 | 467115 | - | gene:TRIDC4BG000110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 109,297.26 Da | 38.05 | 74.44 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 361 | 6.73454E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 11 | 41 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 58 | 92 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 159 | 194 | 3.9E-5 | IPR001680 |
| Pfam | PF07569 | TUP1-like enhancer of split | 685 | 882 | 1.4E-49 | IPR011494 |
| Pfam | PF00400 | WD domain, G-beta repeat | 116 | 153 | 1.8E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 15 | 362 | 1.88E-55 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 257 | 757 | 5.31E-13 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 117 | 386 | 3.1E-41 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 108 | 2.9E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1 | 41 | 0.0054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 322 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 114 | 153 | 5.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 365 | 0.72 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 682 | 410.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 9 | 50 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 103 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 9 | 44 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 194 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 121 | 162 | 16.156128 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 121 | 157 | 13.052855 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 997 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 487 | - | - |
| Coils | Coil | Coil | 930 | 950 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44530.2 | homolog of histone chaperone HIRA. Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2. | 0 |
| RefSeq | XP_037428604.1 | protein HIRA-like [Triticum dicoccoides] | 0 |
| Q652L2 | Protein HIRA OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0567700 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6IK79 | Protein HIRA OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4BG000110.