Basic Information
Locus ID:
gene:TRIDC4AG070720
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 719964955 | 719968725 | - | gene:TRIDC4AG070720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 64,870.50 Da | 37.80 | 96.23 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 228 | 269 | 1.84557E-26 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 351 | 389 | 8.3E-11 | IPR000225 |
| Pfam | PF04564 | U-box domain | 224 | 294 | 2.1E-23 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 393 | 430 | 2.6E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 433 | 471 | 1.5E-8 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 316 | 597 | 1.01E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 299 | 5.3E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 317 | 593 | 1.1E-55 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 224 | 297 | 4.3E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 391 | 431 | 0.0059 | IPR000225 |
| SMART | SM00185 | arm_5 | 514 | 554 | 17.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 350 | 390 | 1.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 432 | 472 | 0.015 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 227 | 290 | 4.0E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 473 | 513 | 83.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 223 | 297 | 44.124119 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 402 | 444 | 8.627399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 361 | 403 | 13.9124 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 603 | - | - |
| Coils | Coil | Coil | 74 | 94 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_037423969.1 | U-box domain-containing protein 12-like [Triticum dicoccoides] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7RDC8 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG070720.