Basic Information
Locus ID:
gene:TRIDC4AG068100
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 709998596 | 710002917 | + | gene:TRIDC4AG068100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 51,790.12 Da | 41.72 | 86.00 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02669 | Peptidase_C19M | 1 | 442 | 0.0 | IPR033809 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 14 | 75 | 2.4E-13 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 115 | 441 | 1.6E-39 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 87 | 1.41E-21 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 112 | 443 | 1.96E-60 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 84 | 444 | 1.1E-90 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 83 | 2.1E-37 | IPR013083 |
| SMART | SM00290 | Zf_UBP_1 | 13 | 62 | 3.4E-17 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 115 | 444 | 33.665836 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 12 | 73 | 17.813093 | IPR001607 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22285.2 | - | 0 |
| RefSeq | XP_037423748.1 | U4/U6.U5 tri-snRNP-associated protein 2-like [Triticum dicoccoides] | 0 |
| Q3TIX9 | Ubiquitin carboxyl-terminal hydrolase 39 OS=Mus musculus OX=10090 GN=Usp39 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453QD37 | U4/U6.U5 tri-snRNP-associated protein 2 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG068100.