Basic Information
Locus ID:
gene:TRIDC4AG068050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 709883174 | 709885688 | + | gene:TRIDC4AG068050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 34,312.15 Da | 31.82 | 78.40 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 33 | 58 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 159 | 197 | 2.3E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 154 | 3.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 18 | 305 | 2.65E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 27 | 307 | 8.1E-64 | IPR015943 |
| SMART | SM00320 | WD40_4 | 113 | 154 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 71 | 110 | 58.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 19 | 58 | 0.95 | IPR001680 |
| SMART | SM00320 | WD40_4 | 208 | 249 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 158 | 197 | 1.3E-11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 154 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 165 | 197 | 15.186998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 165 | 197 | 12.525585 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 141 | 155 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 184 | 198 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 236 | 250 | 1.1E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.2 | Coatomer, beta' subunit. | 0 |
| RefSeq | XP_037419374.1 | coatomer subunit beta'-2-like [Triticum dicoccoides] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6A386 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG068050.